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in alphabetical order per year

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2017:
Bolger, M. ; Gundlach, H. ; Schmutzer, T. ; Chen, J. ; Arend, D. ; Oppermann, M. ; Weise, S. ; Lange, M. ; Fiorani, F. ; Spannagl, M. ; Scholz, U. ; Mayer, K. ; Usadel, B. ; Schwacke, R.
From plant genomes to phenotypes. Journal of biotechnology 261, 46-52 (2017) [10.1016/j.jbiotec.2017.06.003]
Scharr, H; Briese, C.; Embgenbroich P.; Fischbach A.; Fiorani F.; Müller-Linow, M. (2017) Fast High Resolution Volume Carving for 3D Plant Shoot Reconstruction. Frontiers in Plant Science, 8, 1680
DOI=10.3389/fpls.2017.01680

2016:
Arend D, Junker A, Scholz U, Schüler D, Wylie W,  Lange M (2016) PGP repository: a plant phenomics and genomics data publication infrastructure. Database. ncbi.nlm.nih.gov/pubmed/27087305
Arend D, Lange M, Pape JM, Weigelt-Fischer K, Arana-Ceballos F, Mücke I, Klukas C, Altmann T, Scholz U, Junker A:  Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping. Scientific Data. doi: 10.1038/sdata.2016.55
Cendrero-Mateo M.P., Moran M.S., Papuga S.A., Thorp K.R., Alonso L., Moreno J., Ponce-Campos G., Rascher U. & Wang G. (2016): Plant chlorophyll fluorescence: active and passive measurements at canopy and leaf scales with different nitrogen treatments. Journal of Experimental Botany, 67, 275-286
Cendrero-Mateo M.P., Muller O., Albrecht H., Burkart A., Gatzke S., Janssen B., Keller B., Körber N., Kraska T., Matsubara S., Li J., Müller-Linow M., Pieruschka R., Pinto F., Rischbeck P., Schickling A., Steier A., Watt L.M., Schurr U. & Rascher U. (2016): Field phenotyping – concepts and examples to quantify dynamic plant traits across scales in the field. In: Terrestrial ecosystem research infrastructures: challenges, new developments and perspectives. Chabbi A., Löscher H. (eds.), CRC Press/Taylor & Francis, submitted on March 15 2016.
Gioia T., Galinski A., Lenz H., Müller C., Lentz J., Heinz K., Briese C., Putz A., Fiorani F., Watt M., Schurr U., Nagel K A.: GrowScreen-PaGe, a non-invasive, high-throughput phenotyping system based on germination paper to quantify crop phenotypic diversity and plasticity of root traits under varying nutrient supply. Functional Plant Biology, 2016, dx.doi.org/10.1071/FP16128
Jahnke S, Roussel J, Hombach T, Kochs J, Fischbach A, Huber G, Scharr H (2016) phenoSeeder – A robot system for automated handling and phenotyping of individual seeds. Plant Physiology, online. dx.doi.org/10.1104/pp.16.01122
Keil P, Liebsch G, Borisjuk L, Rolletschek H (2016) MultiSense: a multimodal sensor tool enabling the high throughput analysis of respiration. In: XXX (Ed.): Plant respiration & internal oxygen. (Series: Methods in molecular biology, Vol. XXX) New York, NY [u.a.]: Humana Press (2016) accepted.
Munz E, Jakob P M, Borisjuk L (2016) The potential of nuclear magnetic resonance to track lipids in planta. Biochimie dx.doi.org/10.1016/j.biochi.2016.07.014
Pinto F., Damm A., Schickling A., Panigada C., Cogliati S., Müller-Linow M., Balvora A., Rascher U. (2016): Sun-induced chlorophyll fluorescence from high-resolution imaging spectroscopy data to quantify spatio-temporal patterns of photosynthetic function in crop canopies; Plant, Cell & Environment, 39(7):1500-12. doi: 10.1111/pce.12710
Roussel J, Fischbach A, Jahnke S, Scharr H (2016) Surface reconstruction of plant seeds by volume carving: performance and accuracies. Frontiers in Plant Science 7, 745. http://dx.doi.org/10.3389/fpls.2016.00745
Scharr H, Minervini M, French AP, Klukas C, Kramer D M, Liu X, Luengo I, Pape J-M, Polder G, Vukadinovic D, Yin X, Tsaftaris S A (2016) Leaf segmentation in plant phenotyping: a collation study. Machine Vision and Applications 27 (2016) 585-606. dx.doi.org/10.1007/s00138-015-0737-3
Sydoruk, V.; Fiorani, F.; Jahnke, S.; Krause, H.-J. (2016): Design and Characterization of Microwave Cavity Resonators for Noninvasive Monitoring of Plant Water Distribution. IEEE transactions on microwave theory and techniques 64(99), 1 - 11 [10.1109/TMTT.2016.2594218] 
van Dusschoten, D. ; Metzner, R. ; Kochs, J. ; Postma, J. A. ; Pflugfelder, D. ; Bühler, J. ; Schurr, U. ; Jahnke, S. (2016): Quantitative 3D Analysis of Plant Roots growing in Soil using Magnetic Resonance Imaging. Plant physiology 170(3), 1176-1188 [10.1104/pp.15.01388]   

2015:
Bühler J, Rishmawi L, Pflugfelder D, Huber G, Scharr S, Hülskamp M, Koorneef M, Schurr U, Jahnke S (2015) phenoVein – A tool for leaf vein segmentation and analysis. Plant Physiology 169, 2359-2370. doi: http://dx.doi.org/10.1104/pp.15.00974
Burkart A.: Phänotypisierung im Deutschen Pflanzen-Phänotypisierungsnetzwerk – mit Robotern, Oktokoptern und neuen Sensoren dem Nutzpflanzen-Phänotyp auf der Spur. Plenary talk. DLG-Technikertagung, Soest, Germany, 28.01.2014 
Douchkov D, Lück S, Baum T, Seiffert U., Pape JM, Klukas C, Schweizer P. Micro- and macrophenomics for interactions of barley and Arabidopsis with fungal pathogens. Plenary talk. Tagung der DPG-Arbeitskreise „Mykologie“ und „Wirt-Parasit-Beziehungen“, Halle (Saale), Germany, 19.-20.03.2015
Junker A., Muraya MM, Weigelt-Fischer K., Arana-Ceballos F, Klukas C, Melchinger AE, Meyer RC, Riewe D, Altmann T (2015): Optimizing experimental procedures for quantitative evaluation of crop plant performance in high throughput phenotyping systems. Frontiers in Plant Science 5, 770. doi: 10.3389/fpls.2014.00770
Krajewski et al. (2015): Towards recommendations for metadata and data handling in plant phenotyping. J Exp Bot. doi: 10.1093/jxb/erv395
Metzner R.: Advances in Challenges of Phenotyping Biotic and Abiotic Stress: From Lab to Field. Poster presentation. UKPPN Workshop, Sheffield, UK, 12.01.2015
Müller-Linow M. Pinto-Espinosa F., Scharr H. & Rascher U. (2015): The leaf angle distribution of natural plant populations: assessing the canopy with a novel software tool. Plant Methods, 11:11, doi 10.1186/s13007-015-0052-z
Muscolo A, Junker A, Klukas C, Weigelt-Fischer K, Riewe D, Altmann T (2015) Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions. Journal of Experimental Botany doi: 10.1093/jxb/erv208
Niederbacher B., J.B. Winkler and J.P. Schnitzler (2015) Volatile organic compounds as non-invasive markers for plant phenotyping J. Exp. Bot. (2015) doi:10.1093/jxb/erv219
Pape J.-M., Klukas C., 3-D histogram-based segmentation and leaf detection for rosette plants. In: Fleet D, Pajdla T, Schiele B, Tuytelaars T (Eds.): Computer Vision - ECCV 2014 Workshops: 13th European Conference, Zurich, Switzerland, September 6-12, 2014, proceedings, part IV (Series: Lecture Notes in Computer Science) Cham: Springer International Publishing Switzerland (2015) 61-74. ISBN 978-3-319-16219-5
Pape, J-M and Klukas C., (2015): "Utilizing machine learning approaches to improve the prediction of leaf counts and individual leaf segmentation of rosette plant images." Proceedings of the Computer Vision Problems in Plant Phenotyping Workshop, BMVA Press. 2015 doi: 10.5244/C.29.CVPPP.3
Rolletschek H, Fuchs J, Friedel S, Börner A, Todt H, Jakob P, Borisjuk L (2015) A novel noninvasive procedure for high-throughput screening of major seed traits. Plant Biotechnol. J. 13 188-199. dx.doi.org/10.1111/pbi.12245
Schilling S, Gramzow L, Lobbes D, Kirbis A, Weilandt L, Hoffmeier A, Junker A, Weigelt-Fischer K, Klukas C, Wu F, Meng Z, Altmann T, Theissen G (2015) Non-canonical structure, function and phylogeny of the B MADS-box gene OsMADS30 of rice (Oryza sativa). Plant J. 84 (2015) 1059-1072. dx.doi.org/10.1111/tpj.13055
2014:
Cendrero-Mateo P. , Damm A. , MatveevaM. , Pinto F. , Rossini M. , Schickling A. , Rascher U.: Remote sensing of sun-induced fluorescence to measure the functional regulation of photosynthesis. Plenary talk. AGU Conference, San Francisco, 16.-19.12.2014
A. Junker: High throughput plant phenotyping at IPK: facilities and applications, COST FA1306 WorkGroup1 Meeting 'Phenotyping on a whole-plant-level: from lab to field', Larnaca (Zypern), 13.11.2014
A. Junker: Hochdurchsatz-Pflanzenphänotypisierung am Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben: Anwendung für die Analyse der Biomasse-Entwicklung von Lolium perenne, 55. Tagung des DLG-Ausschusses „Gräser, Klee und Zwischenfrüchte", Bonn, 4.11.2014
T. Altmann: Plant Phenotyping for Analysis of Genetic Variation and Heterosis of Growth and Metabolism, Phytotron Conference 2014, Helmholtz Zentrum München, Neuherberg, Germany, 29.-31.10.2014
Wittek F., Niederbacher B., Winkler J.B., Vlot A.C., Schitzler JP.: DPPN PATHO: Phenotyping plant responses to infection by non-invasive confocal imaging and online mass spectrometry. Poster Presentation. Phytotron Conference, Munich, 29.-31.10.2014
Dräxl S., Wittek F., Niederbacher B., Georgii E., Vlot-Schuster A.C., Schäffner A.R., Winkler B., Schnitzler JP, Durner J. and von Rad U.: The German Plant Phenotyping Network (DPPN) – Introducing new and upcoming facilities at the Institute of Biochemical Plant Pathology. Poster Presentation. Phytotron Conference, Munich, 29.-31.10.2014
Pieruschka R.: Closing the phenotyping bottleneck for sustainable increase in plant production. Planary talk. 6th European Network Event „Successful R& I in Europe“, Düsseldorf, 30.- 31.10.2014
T. Altmann: Genetic variation and heterosis of plant growth and metabolism, IGDB-IPK Bilateral Workshop and IPK-CAU Bilateral Workshop, Beijing China, 20.-23.10.2014
C. Klukas: New Methods in High-Throughput Plant Phenotyping for Growth Analysis and Leaf Detection for Rosette Plants. CROP.SENSe.net Symposium Bonn, 30.09.2014
Arend D., Chen J., Colmsee C., Flemming S., Hecht D., Scholz U. and Lange M: The e!DAL JAVA API: Sharing & Citing Research Data in Life Sciences. Poster Presentation. German Conference on Bioinformatics 2014 Bielefeld, Germany. 28.09.-1.10.2014
Keßeler A.: Pflanzen-Phänotypisierungsnetzwerke. Poster Presentation. Kongress der Fachagentur für nachwachsende Rohstoffe (FNR) „Mit Pflanzenzüchtung zum Erfolg“, Berlin, 09.-10.09.2014
Jean-Michel Pape and Christian Klukas: 3-D Histogram-Based Segmenta-tion and Leaf Detection for Rosette Plants. Poster presentation. European Conference on Com-puter Vison (ECCV), Workshop Computer Vision Problems in Plant Pheno-typing (CVPPP), Leaf Segmentation Challenge (LSC), Zürich, 6.-12.09.2014
Olbertz L., Müller-Linow M., Lankes C., Baab G., Noga G., Rascher U.: Quantification of the spatial structure of 3-d canopies - assessing the leaf angle distribution via stereo imaging. Plenary talk. 29th International Horticultural Congress, Brisbane, Australia, 17.-23.08.2014
Arend D.: Data Management Experiences and Best Practices from the Perspective of a Plant Research Institute. Plenary talk. Data Integration in Life Sciences (DILS) 2014 Lisbon, Portugal. 17.-18. July 2014
Altmann T.: Set-up, use, and upgrading of automated plant phenotyping technology at the IPK. Plenary talk. International Plant Phenotyping Conference MPI-MP Potsdam, Germany, 26.-27.06.2014
Schurr U.: Plenary talk: Phenomics. Joint EPSO-FESPB Conference, Dublin, Ireland, 22.-26.06.204
Arend D.: Long-Term Preservation and Management of Scientific Research Data. Plenary talk. DKE Kolloquium, Otto-von-Guericke-Universität Magdeburg. 22.05.2014
Lange M.: Data and Knowledge Engineering in Plant Genomics.Plenary talk. In proceedings of 3. International Workshop on Translational Bioinformatics and Medical Informatics, Turkey, 21.-23.05.2014
Lange M., Scholz U.: Genomes, Sequences, Information Systems. Plenary talk. Data Publication & Information Retrieval, Otto-von-Guericke-Universität Magdeburg, Germany, 20.03.2014
Arend D., Chen J., Colmsee C., Flemming S., Hecht D., Scholz U. and Lange M: The e!DAL JAVA API: Sharing & Citing Research Data in Life Sciences. Poster Presentation. International Symposium on Integrative Bioinformatics 2014. 12.-14.05.2014
Altmann T.: Molecular/ genetic analysis of biomass and metabotite heterosis in Arabidopsis and maize. Plenary talk. 27. Tagung der Molekularbiolgie der Pflanzen Dabringhausen, Germany. 26.-28.03.2014
Schurr U.: Plenary talk: IPPN Symposium, Chennai, India, 17.-19.02.2014
Altmann T.: Plant Phenotyping for Elucidation of Biomass- and Metabolite-Heterosis in Arabidopsis and Maize. Plenary talk, IPPN Symposium, Chennai, India, 17.-19.02.2014
Körber N.: Building National Platforms and International Networks to Tackle the Phenotyping Bottleneck. Poster Presentation. Plant and Animal Genome (PAG)- Conference, San Diego 11.-15.01.2014
Altmann T.: Genetic and Metabolic Marker-Based Prediction of Heterotic Traits in Arabidopsis and Maize. Plenary talk, Plant and Animal Genome (PAG)- Conference, San Diego 11.-15.01.2014
Arend D, Lange M, Chen J, Colmsee C, Flemming S, Hecht D, Scholz U (2014): e!DAL - a framework to store, share and publish research data. BMC Bioinformatics 15 214. dx.doi.org/10.1186/1471-2105-15-214
Fanourakis D., Briese C., Max J.F.J, Kleinen S., Putz A., Fiorani F., Ulbrich A. and Schurr U. (2014): Rapid determination of leaf area and plant height by using light curtain arrays in four species with contrasting shoot architecture.Plant Methods, 10:9 (doi:10.1186/1746-4811-10-9)
Klukas, C., Chen, D., Pape, J.M. (2014): Integrated analysis platform: An open-source information system for high-throughput plant phenotyping. Plant physiology 165(2), 506-518, dx.doi.org/10.1104/pp.113.233932
Metzner R., van Dusschoten D., Bühler J., Schurr U., Jahnke S. (2014): Belowground plant development measured with magnetic resonance imaging (MRI): exploiting the potential for non-invasive trait quantification using sugar beet as a proxy. Frontiers in Plant Science 5, Article 469, 1-11
Raesch A.R., Muller O., Pieruschka R. & Rascher U. (2014): Field observation with Laser Induced Fluorescence Transient (LIFT) method in barley and sugar beet. Agriculture 4, 159-169

2013:
Muller, O., Pieruschka R., Rascher U.: Phenotyping Plant Photosynthesis. Photo-physiology Phenotyping workshop. UKPPN, England,16.-17.12.2013
Arend D.: Long-Term Preservation and Management of Research Data.Planary talk. Research Seminar, Universität Rostock. 28.10.2013.
Junker A.: Phenotyping plants: imaging-based methods for analyzing plant biomass, architecture, physiology, and efficiency. Plenary talk, 1st Barlomics Summer School Gatersleben, Germany, 09.-12.09.2013
Schurr U, Altmann T, Durner J, Keßeler A: Establishing phenotyping capacity within the German Plant Phenotyping Network (DPPN), EPPN Workshop, Porto Heli, Greece, 05.09.2013
Altmann T: Plant Phenotyping at IPK Gatersleben: Installations accessible through EPPN and examples of current applications. Plenary talk. EPPN Workshop Porto Heli, Greece, 05.09.2013
Nagel K., Fiorani F., Schurr U.: Image analysis systems for root phenotyping at Jülich Plant Phenotyping Centre (JPPC), Jahrestagung der Österreichischen Gesellschaft für Wurzelforschung (ASSR), Illmitz, Österreich, 16.-17.09.2013
Briese C., Bodewein T., Fiorani F.: Plant Shoot Image Segmentation using Colour Features and Support Vector Machines. Poster Presentation. Second International Workshop on Image Analysis Methods for the Plant Sciences, CPIB, University of Nottingham, England 2.-3.09.2013,. http://www.cpib.ac.uk/outreach/image-analysis-workshop-2013/
Pieruschka R.: Plant Phenotyping at the Jülich Plant Phenotyping Centre Invited speaker at University of Alnarp, Sweden, 27.07.2013
Fiorani F.: Rich representation by non-¬invasive sensors provides insight into spatial and temporal dynamics of plantorgan growth, development, and responses to environmental clues. Learning from the Plant Kingdom to Invent Smart Artificial Solutions, London, England, 19.07.2013
Schurr U., van Dusschoten D., Metzner R., Jahnke S., Bühler J., Nagel K., Fiorani F., Bloßfeld S., Faget M., Wojciechowski T., Schneider H., Scharr H., Kuhn AJ., Huber G., Temperton V., Windt C., Ernst M., Postma J.: Dynamics of plant root systems for resource use efficiency. SEB Annual Main Meeting 2013, Valencia, Spain, 03.-07.07.2013
Jansen M., Nagel K., Braun S., Kastenholz B., Schurr U., Fiorani F.: Phenotyping technologies for quantitative analyses of Arabidopsis shoot and root systems. ICAR 2013- 24th International Conference on Arabidopsis Research, Sydney, Australia, 24.-28.06.2013
Fiorani F., Postma J., Schurr U.: Traits and technologies for plant phenotyping. Olomouc Biotech 2013. Plant Biotechnology: Green for Good II, Olomouc, Tschechien, 17.-21.06.2013
Lange M.: Management von Forschungsprimärdaten und DOI Registrierung. Plenary talk. Geschäftsstelle Leibniz Gemeinschaft Berlin, Germany, 19.06.2013
Nagel K., Bloßfeld, S., Ernst, M., Fiorani, F.: Root phenotyping - analysing the hidden traits by using 2D approaches, CROP.SENSe.net Summer School 2013 'The Root Zone: Improving Resource Efficiency of Crops', Jülich, Deutschland, 22.05.2013
Fuchs J, Neuberger T, Rolletschek H, Schiebold S, Nguyen TH, Borisjuk N, Börner A, Melkus G, Jakob P,Borisjuk L. (2013): A noninvasive platform for imaging and quantifying oil storage in submillimeter tobacco seed Plant Physiol. Feb;161(2):583-93. doi: 10.1104/pp.112.210062. Epub 2012 Dec 11.
Postma J.A.,Schurr U., Fiorani F. (2013): Dynamic root growth and architecture responses to limiting nutrient availability: linking physiological models and experimentation, Biotechnology Advances, Available online 5 September 2013, ISSN 0734-9750, http://dx.doi.org/10.1016/j.biotechadv.2013.08.019
2012:
Pieruschka R.: Plant Phenotyping at the Jülich Plant Phenotyping Centre, Workshop: Plant Phenotyping, Poznan, Poland, 11.12.2012
Pieruschka R.: Plant Phenotyping in Europe: Cooperation Opportunities with Africa, Third CAAST-Net stakeholders' conference on Africa-Europe S&T cooperation in cooperation with PAERIP, Accra, Ghana, 3.-5.12.2012.
Pieruschka R., Nagel K.A., Jahnke S., Rascher U., Fiorani F., Schurr U.: Non-invasive measurements of plant traits at the Jülich Plant Phenotyping Centre, Phenodays, Wageningen, Netherlands, 11.10.2012

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